HL_6ORD_228
3D structure
- PDB id
- 6ORD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(PSU)AAC(5MU)A(PSU)AA(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 6ORD|1|YA|A|1913
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ORD_228 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.4295
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6ORD|1|YA|G|1910
6ORD|1|YA|PSU|1911
6ORD|1|YA|A|1912
6ORD|1|YA|A|1913
6ORD|1|YA|C|1914
6ORD|1|YA|5MU|1915
6ORD|1|YA|A|1916
6ORD|1|YA|PSU|1917
6ORD|1|YA|A|1918
6ORD|1|YA|A|1919
6ORD|1|YA|OMC|1920
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XV
- Transfer RNA; tRNA
- Chain XX
- mRNA
- Chain XY
- Transfer RNA; tRNA
Coloring options: