3D structure

PDB id
6ORL (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 pre-accommodated 70S complex at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
6ORL|1|1|A|751, 6ORL|1|1|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ORL_022 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.1233
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6ORL|1|1|U|744
6ORL|1|1|1MG|745
6ORL|1|1|PSU|746
6ORL|1|1|5MU|747
6ORL|1|1|G|748
6ORL|1|1|A|749
6ORL|1|1|A|750
6ORL|1|1|A|751
6ORL|1|1|A|752
6ORL|1|1|A|753

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32
Chain d
50S ribosomal protein L34

Coloring options:


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