HL_6ORL_040

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6ORL|1|1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1162

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ORL|1|1|A|1630
6ORL|1|1|G|1631
6ORL|1|1|A|1632
6ORL|1|1|G|1633
6ORL|1|1|A|1634
6ORL|1|1|A|1635
6ORL|1|1|U|1636

Current chains

Chain 1

23S ribosomal RNA

Nearby chains