3D structure

PDB id
6ORL (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 pre-accommodated 70S complex at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
6ORL|1|1|A|1780, 6ORL|1|1|U|1781, 6ORL|1|1|U|1782, 6ORL|1|1|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ORL_044 not in the Motif Atlas
Homologous match to HL_7RQB_045
Geometric discrepancy: 0.1352
The information below is about HL_7RQB_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.5
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

6ORL|1|1|U|1777
6ORL|1|1|U|1778
6ORL|1|1|U|1779
6ORL|1|1|A|1780
6ORL|1|1|U|1781
6ORL|1|1|U|1782
6ORL|1|1|A|1783
6ORL|1|1|A|1784
6ORL|1|1|A|1785
6ORL|1|1|A|1786
6ORL|1|1|A|1787

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain d
50S ribosomal protein L34

Coloring options:


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