HL_6ORL_092

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6ORL|1|2|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ORL_092 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1238

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ORL|1|2|G|1089
6ORL|1|2|U|1090
6ORL|1|2|U|1091
6ORL|1|2|A|1092
6ORL|1|2|A|1093
6ORL|1|2|G|1094
6ORL|1|2|U|1095
6ORL|1|2|C|1096

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain l

30S ribosomal protein S7

Chain z

30S ribosomal protein S21