HL_6OSI_044

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

6OSI|1|RA|U|270|||M, 6OSI|1|RA|U|270|||P

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_044 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3846

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6OSI|1|RA|G|270|||K
6OSI|1|RA|C|270|||L
6OSI|1|RA|U|270|||M
6OSI|1|RA|U|270|||N
6OSI|1|RA|G|270|||O
6OSI|1|RA|U|270|||P
6OSI|1|RA|C|270|||Q

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9