HL_6OSI_192

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6OSI|1|YA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OSI_192 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2252

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6OSI|1|YA|G|1949
6OSI|1|YA|G|1950
6OSI|1|YA|U|1951
6OSI|1|YA|A|1952
6OSI|1|YA|A|1953
6OSI|1|YA|G|1954
6OSI|1|YA|U|1955
6OSI|1|YA|U|1956
6OSI|1|YA|C|1957

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YO

50S ribosomal protein L14