HL_6OST_054

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OST_054 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2166

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6OST|1|1|G|2303
6OST|1|1|G|2304
6OST|1|1|U|2305
6OST|1|1|C|2306
6OST|1|1|G|2307
6OST|1|1|G|2308
6OST|1|1|A|2309
6OST|1|1|C|2310
6OST|1|1|A|2311
6OST|1|1|U|2312
6OST|1|1|C|2313

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L5