HL_6OST_076

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OST_076 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1306

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OST|1|2|A|320
6OST|1|2|A|321
6OST|1|2|C|322
6OST|1|2|U|323
6OST|1|2|G|324
6OST|1|2|A|325
6OST|1|2|G|326
6OST|1|2|A|327
6OST|1|2|C|328
6OST|1|2|A|329
6OST|1|2|C|330
6OST|1|2|G|331
6OST|1|2|G|332
6OST|1|2|U|333

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20