HL_6OTR_091
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGGAUG
- Length
- 6 nucleotides
- Bulged bases
- 6OTR|1|RA|G|2210, 6OTR|1|RA|G|2211, 6OTR|1|RA|U|2213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OTR_091 not in the Motif Atlas
- Geometric match to HL_5TBW_004
- Geometric discrepancy: 0.3467
- The information below is about HL_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86929.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6OTR|1|RA|C|2209
6OTR|1|RA|G|2210
6OTR|1|RA|G|2211
6OTR|1|RA|A|2212
6OTR|1|RA|U|2213
6OTR|1|RA|G|2215
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R1
- 50S ribosomal protein L28
- Chain RD
- 50S ribosomal protein L2
Coloring options: