3D structure

PDB id
6OTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
6OTR|1|YA|A|1780, 6OTR|1|YA|C|1781, 6OTR|1|YA|C|1782, 6OTR|1|YA|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OTR_194 not in the Motif Atlas
Homologous match to HL_7RQB_045
Geometric discrepancy: 0.0642
The information below is about HL_7RQB_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.5
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

6OTR|1|YA|U|1777
6OTR|1|YA|U|1778
6OTR|1|YA|U|1779
6OTR|1|YA|A|1780
6OTR|1|YA|C|1781
6OTR|1|YA|C|1782
6OTR|1|YA|A|1783
6OTR|1|YA|A|1784
6OTR|1|YA|A|1785
6OTR|1|YA|A|1786
6OTR|1|YA|A|1787

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YD
50S ribosomal protein L2
Chain YW
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0966 s