HL_6OTR_215
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6OTR|1|YA|G|2751, 6OTR|1|YA|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OTR_215 not in the Motif Atlas
- Homologous match to HL_7RQB_066
- Geometric discrepancy: 0.1611
- The information below is about HL_7RQB_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.7
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 8
Unit IDs
6OTR|1|YA|C|2745
6OTR|1|YA|U|2746
6OTR|1|YA|G|2747
6OTR|1|YA|A|2748
6OTR|1|YA|A|2749
6OTR|1|YA|A|2750
6OTR|1|YA|G|2751
6OTR|1|YA|C|2752
6OTR|1|YA|A|2753
6OTR|1|YA|U|2754
6OTR|1|YA|C|2755
6OTR|1|YA|U|2756
6OTR|1|YA|A|2757
6OTR|1|YA|A|2758
6OTR|1|YA|G|2759
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YH
- 50S ribosomal protein L6
- Chain YN
- 50S ribosomal protein L13
Coloring options: