HL_6OXA_029

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_029 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.1935

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6OXA|1|QA|C|1314
6OXA|1|QA|U|1315
6OXA|1|QA|G|1316
6OXA|1|QA|C|1317
6OXA|1|QA|A|1318
6OXA|1|QA|A|1319
6OXA|1|QA|C|1320
6OXA|1|QA|C|1321
6OXA|1|QA|C|1322
6OXA|1|QA|G|1323

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QN

30S ribosomal protein S14 type Z

Chain QS

30S ribosomal protein S19