HL_6OXA_043

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6OXA|1|RA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_043 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1081

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6OXA|1|RA|G|194
6OXA|1|RA|A|195
6OXA|1|RA|A|196
6OXA|1|RA|A|197
6OXA|1|RA|C|198
6OXA|1|RA|A|199
6OXA|1|RA|U|200
6OXA|1|RA|C|201

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15