HL_6OXA_091

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

6OXA|1|RA|G|2210, 6OXA|1|RA|G|2211, 6OXA|1|RA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_091 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.3696

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6OXA|1|RA|C|2209
6OXA|1|RA|G|2210
6OXA|1|RA|G|2211
6OXA|1|RA|A|2212
6OXA|1|RA|U|2213
6OXA|1|RA|G|2215

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2

Chain RI

50S ribosomal protein L9