HL_6OXA_105

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6OXA|1|RA|G|2751, 6OXA|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OXA_105 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1663

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6OXA|1|RA|C|2745
6OXA|1|RA|U|2746
6OXA|1|RA|G|2747
6OXA|1|RA|A|2748
6OXA|1|RA|A|2749
6OXA|1|RA|A|2750
6OXA|1|RA|G|2751
6OXA|1|RA|C|2752
6OXA|1|RA|A|2753
6OXA|1|RA|U|2754
6OXA|1|RA|C|2755
6OXA|1|RA|U|2756
6OXA|1|RA|A|2757
6OXA|1|RA|A|2758
6OXA|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13