HL_6OXA_221
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- 6OXA|1|QW|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OXA_221 not in the Motif Atlas
- Homologous match to HL_7OSM_128
- Geometric discrepancy: 0.2734
- The information below is about HL_7OSM_128
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6OXA|1|QW|G|29
6OXA|1|QW|G|30
6OXA|1|QW|G|31
6OXA|1|QW|C|32
6OXA|1|QW|U|33
6OXA|1|QW|C|34
6OXA|1|QW|A|35
6OXA|1|QW|U|36
6OXA|1|QW|A|37
6OXA|1|QW|A|38
6OXA|1|QW|C|39
6OXA|1|QW|C|40
6OXA|1|QW|C|41
Current chains
- Chain QW
- P-site tRNA-fMet
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QG
- 30S ribosomal protein S7
- Chain QK
- 30S ribosomal protein S11
- Chain QV
- Transfer RNA; tRNA
- Chain QX
- mRNA
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