HL_6P4G_033

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6P4G|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4G_033 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1412

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6P4G|1|2|G|1366
6P4G|1|2|U|1367
6P4G|1|2|U|1368
6P4G|1|2|A|1369
6P4G|1|2|A|1370
6P4G|1|2|U|1371
6P4G|1|2|U|1372
6P4G|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17