HL_6P4H_029

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6P4H|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P4H_029 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1069

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6P4H|1|2|G|1245
6P4H|1|2|A|1246
6P4H|1|2|C|1247
6P4H|1|2|U|1248
6P4H|1|2|C|1249
6P4H|1|2|A|1250
6P4H|1|2|A|1251
6P4H|1|2|C|1252
6P4H|1|2|A|1253
6P4H|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain e

eS29