HL_6P5J_001
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGAAAUUUCCAAUAAACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5J_001 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.3752
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6P5J|1|1|A|6443
6P5J|1|1|G|6444
6P5J|1|1|G|6445
6P5J|1|1|A|6446
6P5J|1|1|A|6447
6P5J|1|1|A|6448
6P5J|1|1|U|6449
6P5J|1|1|U|6450
6P5J|1|1|U|6451
6P5J|1|1|C|6452
6P5J|1|1|C|6453
6P5J|1|1|A|6454
6P5J|1|1|A|6455
6P5J|1|1|U|6456
6P5J|1|1|A|6457
6P5J|1|1|A|6458
6P5J|1|1|A|6459
6P5J|1|1|C|6460
6P5J|1|1|U|6461
Current chains
- Chain 1
- IAPV-IRES
Nearby chains
- Chain AJ
- uL11
- Chain Ao
- eL42
Coloring options: