HL_6P5J_023

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_023 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2439

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6P5J|1|2|A|957
6P5J|1|2|G|958
6P5J|1|2|G|959
6P5J|1|2|U|960
6P5J|1|2|G|961
6P5J|1|2|A|962
6P5J|1|2|A|963
6P5J|1|2|A|964
6P5J|1|2|U|965
6P5J|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11