HL_6P5J_040
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 6P5J|1|5|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5J_040 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.1142
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6P5J|1|5|U|37
6P5J|1|5|A|38
6P5J|1|5|A|39
6P5J|1|5|G|40
6P5J|1|5|C|41
6P5J|1|5|A|42
6P5J|1|5|U|43
6P5J|1|5|A|44
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AL
- eL13
- Chain AN
- eL15
- Chain Aa
- uL15
- Chain Ao
- eL42
Coloring options: