HL_6P5J_047
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 6P5J|1|5|G|294, 6P5J|1|5|A|295, 6P5J|1|5|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5J_047 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.1312
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6P5J|1|5|C|289
6P5J|1|5|U|290
6P5J|1|5|U|291
6P5J|1|5|G|292
6P5J|1|5|G|293
6P5J|1|5|G|294
6P5J|1|5|A|295
6P5J|1|5|A|296
6P5J|1|5|U|297
6P5J|1|5|G|298
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AL
- eL13
- Chain AN
- eL15
- Chain AQ
- eL18
- Chain Aa
- uL15
- Chain Ao
- eL42
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