HL_6P5J_061

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6P5J|1|5|C|1481, 6P5J|1|5|G|1482, 6P5J|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5J_061 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.5655

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6P5J|1|5|G|1479
6P5J|1|5|C|1480
6P5J|1|5|C|1481
6P5J|1|5|G|1482
6P5J|1|5|C|1483
6P5J|1|5|G|1484
6P5J|1|5|C|1485
6P5J|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AL

eL13

Chain Ai

eL36