3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAUUUA
Length
6 nucleotides
Bulged bases
6P5K|1|1|A|6498, 6P5K|1|1|U|6499, 6P5K|1|1|U|6501
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_002 not in the Motif Atlas
Geometric match to HL_4V9F_021
Geometric discrepancy: 0.2858
The information below is about HL_4V9F_021
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

6P5K|1|1|U|6497
6P5K|1|1|A|6498
6P5K|1|1|U|6499
6P5K|1|1|U|6500
6P5K|1|1|U|6501
6P5K|1|1|A|6502

Current chains

Chain 1
IAPV-IRES

Nearby chains

Chain G
uS7
Chain P
uS11

Coloring options:


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