HL_6P5K_002

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUA

Length

6 nucleotides

Bulged bases

6P5K|1|1|A|6498, 6P5K|1|1|U|6499, 6P5K|1|1|U|6501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_002 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.2858

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6P5K|1|1|U|6497
6P5K|1|1|A|6498
6P5K|1|1|U|6499
6P5K|1|1|U|6500
6P5K|1|1|U|6501
6P5K|1|1|A|6502

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain G

uS7

Chain P

uS11