HL_6P5K_004
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUGGGCAGUU
- Length
- 11 nucleotides
- Bulged bases
- 6P5K|1|1|U|6562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_004 not in the Motif Atlas
- Geometric match to HL_4V83_139
- Geometric discrepancy: 0.3849
- The information below is about HL_4V83_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53597.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
6P5K|1|1|A|6560
6P5K|1|1|C|6561
6P5K|1|1|U|6562
6P5K|1|1|G|6563
6P5K|1|1|G|6564
6P5K|1|1|G|6565
6P5K|1|1|C|6566
6P5K|1|1|A|6567
6P5K|1|1|G|6568
6P5K|1|1|U|6569
6P5K|1|1|U|6570
Current chains
- Chain 1
- IAPV-IRES
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: