3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGGUAACACA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_005 not in the Motif Atlas
Geometric match to HL_5ID6_001
Geometric discrepancy: 0.2428
The information below is about HL_5ID6_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

6P5K|1|1|U|6583
6P5K|1|1|G|6584
6P5K|1|1|G|6585
6P5K|1|1|U|6586
6P5K|1|1|A|6587
6P5K|1|1|A|6588
6P5K|1|1|C|6589
6P5K|1|1|A|6590
6P5K|1|1|C|6591
6P5K|1|1|A|6592

Current chains

Chain 1
IAPV-IRES

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain AI
uL16

Coloring options:


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