HL_6P5K_005
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGUAACACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_005 not in the Motif Atlas
- Geometric match to HL_5ID6_001
- Geometric discrepancy: 0.2428
- The information below is about HL_5ID6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6P5K|1|1|U|6583
6P5K|1|1|G|6584
6P5K|1|1|G|6585
6P5K|1|1|U|6586
6P5K|1|1|A|6587
6P5K|1|1|A|6588
6P5K|1|1|C|6589
6P5K|1|1|A|6590
6P5K|1|1|C|6591
6P5K|1|1|A|6592
Current chains
- Chain 1
- IAPV-IRES
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- uL16
Coloring options: