HL_6P5K_011

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCGG

Length

5 nucleotides

Bulged bases

6P5K|1|2|C|323

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_011 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3984

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6P5K|1|2|C|321
6P5K|1|2|C|322
6P5K|1|2|C|323
6P5K|1|2|G|329
6P5K|1|2|G|330

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6