3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCCGG
Length
5 nucleotides
Bulged bases
6P5K|1|2|C|323
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_011 not in the Motif Atlas
Geometric match to HL_8C3A_039
Geometric discrepancy: 0.3984
The information below is about HL_8C3A_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

6P5K|1|2|C|321
6P5K|1|2|C|322
6P5K|1|2|C|323
6P5K|1|2|G|329
6P5K|1|2|G|330

Current chains

Chain 2
18S rRNA

Nearby chains

Chain H
eS6

Coloring options:


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