HL_6P5K_011
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCCGG
- Length
- 5 nucleotides
- Bulged bases
- 6P5K|1|2|C|323
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_011 not in the Motif Atlas
- Geometric match to HL_8C3A_039
- Geometric discrepancy: 0.3984
- The information below is about HL_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6P5K|1|2|C|321
6P5K|1|2|C|322
6P5K|1|2|C|323
6P5K|1|2|G|329
6P5K|1|2|G|330
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS6
Coloring options: