HL_6P5K_026
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6P5K|1|2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_026 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2036
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6P5K|1|2|G|1054
6P5K|1|2|A|1055
6P5K|1|2|U|1056
6P5K|1|2|C|1057
6P5K|1|2|A|1058
6P5K|1|2|G|1059
6P5K|1|2|A|1060
6P5K|1|2|U|1061
6P5K|1|2|A|1062
6P5K|1|2|C|1063
6P5K|1|2|C|1064
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uS11
- Chain b
- eS26
Coloring options: