HL_6P5K_036

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_036 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1765

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6P5K|1|2|C|1565
6P5K|1|2|G|1566
6P5K|1|2|G|1567
6P5K|1|2|C|1568
6P5K|1|2|A|1569
6P5K|1|2|G|1570

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain U

eS19