3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGC
Length
4 nucleotides
Bulged bases
6P5K|1|2|G|1771
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_039 not in the Motif Atlas
Geometric match to HL_1WZ2_007
Geometric discrepancy: 0.1842
The information below is about HL_1WZ2_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6P5K|1|2|G|1760
6P5K|1|2|U|1761
6P5K|1|2|G|1771
6P5K|1|2|C|1772

Current chains

Chain 2
18S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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