3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
6P5K|1|5|G|134, 6P5K|1|5|G|135
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_044 not in the Motif Atlas
Geometric match to HL_4V88_198
Geometric discrepancy: 0.2711
The information below is about HL_4V88_198
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

6P5K|1|5|C|131
6P5K|1|5|G|132
6P5K|1|5|C|133
6P5K|1|5|G|134
6P5K|1|5|G|135
6P5K|1|5|C|136
6P5K|1|5|G|137

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain AN
eL15
Chain Ah
eL35
Chain Aj
eL37

Coloring options:


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