HL_6P5K_046

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

6P5K|1|5|U|224, 6P5K|1|5|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_046 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0946

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6P5K|1|5|C|222
6P5K|1|5|G|223
6P5K|1|5|U|224
6P5K|1|5|G|225
6P5K|1|5|G|226

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AY

uL24