3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
6P5K|1|5|G|294, 6P5K|1|5|A|295, 6P5K|1|5|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_048 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.1511
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6P5K|1|5|C|289
6P5K|1|5|U|290
6P5K|1|5|U|291
6P5K|1|5|G|292
6P5K|1|5|G|293
6P5K|1|5|G|294
6P5K|1|5|A|295
6P5K|1|5|A|296
6P5K|1|5|U|297
6P5K|1|5|G|298

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AL
eL13
Chain AN
eL15
Chain AQ
eL18
Chain Aa
uL15
Chain Ao
eL42

Coloring options:


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