HL_6P5K_054

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

6P5K|1|5|A|966, 6P5K|1|5|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_054 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1502

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6P5K|1|5|C|962
6P5K|1|5|G|963
6P5K|1|5|A|964
6P5K|1|5|G|965
6P5K|1|5|A|966
6P5K|1|5|C|967
6P5K|1|5|C|968
6P5K|1|5|U|969
6P5K|1|5|G|970

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AE

eL6

Chain AF

uL30