HL_6P5K_055

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

6P5K|1|5|U|1179, 6P5K|1|5|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_055 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2351

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|U|1177
6P5K|1|5|G|1178
6P5K|1|5|U|1179
6P5K|1|5|C|1180
6P5K|1|5|C|1183
6P5K|1|5|A|1184

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain AD

uL18

Chain AI

uL16