HL_6P5K_056

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6P5K|1|5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_056 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.0829

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6P5K|1|5|U|1317
6P5K|1|5|C|1318
6P5K|1|5|U|1319
6P5K|1|5|U|1320
6P5K|1|5|G|1321
6P5K|1|5|A|1322
6P5K|1|5|A|1323
6P5K|1|5|A|1324
6P5K|1|5|C|1325
6P5K|1|5|A|1326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain Aa

uL15

Chain Ae

eL32