3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_062 not in the Motif Atlas
Homologous match to HL_8C3A_019
Geometric discrepancy: 0.3743
The information below is about HL_8C3A_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6P5K|1|5|G|1561
6P5K|1|5|G|1562
6P5K|1|5|A|1563
6P5K|1|5|A|1564
6P5K|1|5|A|1565
6P5K|1|5|C|1566

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain Ap
eL43
Chain M
uS17
Chain O
uS15

Coloring options:


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