HL_6P5K_067

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6P5K|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_067 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.338

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5K|1|5|C|1816
6P5K|1|5|U|1817
6P5K|1|5|G|1818
6P5K|1|5|G|1819
6P5K|1|5|U|1820
6P5K|1|5|G|1821
6P5K|1|5|U|1822
6P5K|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AD

uL18

Chain AT

eL21

Chain Ab

eL29