HL_6P5K_070

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

6P5K|1|5|G|1981, 6P5K|1|5|A|1984, 6P5K|1|5|G|1985, 6P5K|1|5|U|1986

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_070 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.3314

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6P5K|1|5|C|1977
6P5K|1|5|C|1978
6P5K|1|5|A|1979
6P5K|1|5|U|1980
6P5K|1|5|G|1981
6P5K|1|5|G|1982
6P5K|1|5|A|1983
6P5K|1|5|A|1984
6P5K|1|5|G|1985
6P5K|1|5|U|1986
6P5K|1|5|C|1987
6P5K|1|5|G|1988
6P5K|1|5|G|1989

Current chains

Chain 5

28S rRNA

Nearby chains