HL_6P5K_081

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_081 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.35

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6P5K|1|5|G|2664
6P5K|1|5|U|2665
6P5K|1|5|U|2666
6P5K|1|5|C|2667
6P5K|1|5|G|2668
6P5K|1|5|C|2669
6P5K|1|5|C|2670

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19

Chain Ap

eL43