HL_6P5K_086
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUCGG
- Length
- 6 nucleotides
- Bulged bases
- 6P5K|1|5|U|2874
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_086 not in the Motif Atlas
- Homologous match to HL_8C3A_043
- Geometric discrepancy: 0.1224
- The information below is about HL_8C3A_043
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
6P5K|1|5|C|2872
6P5K|1|5|U|2873
6P5K|1|5|U|2874
6P5K|1|5|C|2875
6P5K|1|5|G|2876
6P5K|1|5|G|2877
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain An
- eL41
- Chain Ap
- eL43
Coloring options: