HL_6P5K_086

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6P5K|1|5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_086 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1224

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6P5K|1|5|C|2872
6P5K|1|5|U|2873
6P5K|1|5|U|2874
6P5K|1|5|C|2875
6P5K|1|5|G|2876
6P5K|1|5|G|2877

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain An

eL41

Chain Ap

eL43