3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
6P5K|1|5|U|2874
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_086 not in the Motif Atlas
Homologous match to HL_8C3A_043
Geometric discrepancy: 0.1224
The information below is about HL_8C3A_043
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

6P5K|1|5|C|2872
6P5K|1|5|U|2873
6P5K|1|5|U|2874
6P5K|1|5|C|2875
6P5K|1|5|G|2876
6P5K|1|5|G|2877

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain An
eL41
Chain Ap
eL43

Coloring options:


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