HL_6P5K_087

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUGGCAGC

Length

9 nucleotides

Bulged bases

6P5K|1|5|G|3597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_087 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3426

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6P5K|1|5|G|2898
6P5K|1|5|C|2899
6P5K|1|5|U|2900
6P5K|1|5|G|2901
6P5K|1|5|G|3597
6P5K|1|5|C|3598
6P5K|1|5|A|3599
6P5K|1|5|G|3600
6P5K|1|5|C|3601

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AR

eL19