HL_6P5K_093

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6P5K|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_093 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0806

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6P5K|1|5|U|3796
6P5K|1|5|C|3797
6P5K|1|5|U|3798
6P5K|1|5|A|3799
6P5K|1|5|A|3800
6P5K|1|5|U|3801
6P5K|1|5|U|3802
6P5K|1|5|A|3803
6P5K|1|5|G|3804

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AV

uL14