HL_6P5K_094

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6P5K|1|5|A|3876, 6P5K|1|5|A|3877, 6P5K|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_094 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0658

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|G|3873
6P5K|1|5|G|3874
6P5K|1|5|G|3875
6P5K|1|5|A|3876
6P5K|1|5|A|3877
6P5K|1|5|C|3878
6P5K|1|5|G|3879
6P5K|1|5|G|3880
6P5K|1|5|G|3881
6P5K|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain Ae

eL32