HL_6P5K_102
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCAGUACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_102 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.2356
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6P5K|1|5|U|4301
6P5K|1|5|U|4302
6P5K|1|5|C|4303
6P5K|1|5|A|4304
6P5K|1|5|G|4305
6P5K|1|5|U|4306
6P5K|1|5|A|4307
6P5K|1|5|C|4308
6P5K|1|5|G|4309
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AQ
- eL18
- Chain AT
- eL21
- Chain Aa
- uL15
- Chain Ao
- eL42
Coloring options: