HL_6P5K_118
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_118 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.1855
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6P5K|1|8|C|47
6P5K|1|8|A|48
6P5K|1|8|G|49
6P5K|1|8|C|50
6P5K|1|8|U|51
6P5K|1|8|A|52
6P5K|1|8|G|53
6P5K|1|8|C|54
6P5K|1|8|U|55
6P5K|1|8|G|56
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- eL23
- Chain Ah
- eL35
- Chain Aj
- eL37
- Chain Al
- eL39
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