HL_6P5K_120

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5K_120 not in the Motif Atlas

Homologous match to HL_8P9A_188

Geometric discrepancy: 0.1551

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6P5K|1|8|C|107
6P5K|1|8|A|108
6P5K|1|8|C|109
6P5K|1|8|U|110
6P5K|1|8|U|111
6P5K|1|8|G|112

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AX

eL23

Chain Aj

eL37

Chain Al

eL39