3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUCUCGUCUGAUCU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_135 not in the Motif Atlas
Homologous match to HL_8C3A_228
Geometric discrepancy: 0.166
The information below is about HL_8C3A_228
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50688.1
Basepair signature
cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
Number of instances in this motif group
2

Unit IDs

6P5K|1|7|A|32
6P5K|1|7|U|33
6P5K|1|7|C|34
6P5K|1|7|U|35
6P5K|1|7|C|36
6P5K|1|7|G|37
6P5K|1|7|U|38
6P5K|1|7|C|39
6P5K|1|7|U|40
6P5K|1|7|G|41
6P5K|1|7|A|42
6P5K|1|7|U|43
6P5K|1|7|C|44
6P5K|1|7|U|45

Current chains

Chain 7
5S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain AD
uL18
Chain AJ
uL11

Coloring options:


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