HL_6P5K_135
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_135 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.166
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6P5K|1|7|A|32
6P5K|1|7|U|33
6P5K|1|7|C|34
6P5K|1|7|U|35
6P5K|1|7|C|36
6P5K|1|7|G|37
6P5K|1|7|U|38
6P5K|1|7|C|39
6P5K|1|7|U|40
6P5K|1|7|G|41
6P5K|1|7|A|42
6P5K|1|7|U|43
6P5K|1|7|C|44
6P5K|1|7|U|45
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- uL18
- Chain AJ
- uL11
Coloring options: