HL_6P5N_095
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 6P5N|1|5|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5N_095 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.0887
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6P5N|1|5|U|3796
6P5N|1|5|C|3797
6P5N|1|5|U|3798
6P5N|1|5|A|3799
6P5N|1|5|A|3800
6P5N|1|5|U|3801
6P5N|1|5|U|3802
6P5N|1|5|A|3803
6P5N|1|5|G|3804
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- uL14
- Chain Aq
- Eukaryotic peptide chain release factor subunit 1
Coloring options: